Software and code

DeepProfiler

deepprofiler logo DeepProfiler is a set of tools that allow you to use deep learning for analyzing imaging data in high-throughput biological experiments. Please, see our Wiki documentation page for more details about how to use it.

Instructions to download DeepProfiler can be found on the Github page.

Cytominer

Pycytominer

The Pycytominer Python package is a suite of common functions used to process high dimensional readouts from high-throughput single cell experiments. More information can be found on the Github page.