Software and code


deepprofiler logo DeepProfiler is a set of tools that allow you to use deep learning for analyzing imaging data in high-throughput biological experiments. 

Documentation and instructions for DeepProfiler can be found in our Handbook and the code is located on the GitHub page.



The Pycytominer Python package is a suite of common functions used to process high dimensional readouts from high-throughput single cell experiments. More information can be found on the Github page.