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  2. Beth Cimini

When To Say ‘Good Enough’

October 21, 2019

Beth Cimini

One of the most common questions I’m asked when helping a collaborator with an image analysis project is:

“How do I know when my analysis workflow is doing well enough at finding the...

Read More When To Say ‘Good Enough’

Announcing CellProfiler 3.1.9

September 10, 2019

Beth Cimini

Hello all! It’s been a crazy last few months for the CellProfiler team, as we’ve been hiring some new members to the team and working hard on the transition to Python 3, which will...

  • Comments
Read More Announcing CellProfiler 3.1.9

Announcing CellProfiler 3.1.8

December 21, 2018

Beth Cimini

Happy holidays to everyone- we here at the CellProfiler team got you a little end-of-year treat in the form of CellProfiler 3.1.8.  This is primarily a bugfix release, getting rid of...

  • Comments
Read More Announcing CellProfiler 3.1.8

Announcing CellProfiler 3.1

July 26, 2018

Beth Cimini

I’m excited to announce the release of CellProfiler 3.1.

Our focus for CellProfiler 3.1 was polishing features and squashing bugs introduced in CellProfiler 3.0. We also started...

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Read More Announcing CellProfiler 3.1

The CellProfiler 2 User’s Guide to CellProfiler 3.0, Part II: Converting your pipelines

October 24, 2017

Beth Cimini

For those of you who’ve been with us for a long time though, the obvious next question after how to use the new test mode is will my old CellProfiler pipelines work in the new...

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Read More The CellProfiler 2 User’s Guide to CellProfiler 3.0, Part II: Converting your pipelines

The CellProfiler 2 User’s Guide to CellProfiler 3.0, Part I: Using the new Test Mode

October 24, 2017

Beth Cimini

Everyone here at the CellProfiler team is very excited about our new 3.0 release, and we certainly hope you are too!  CellProfiler 3.0 is much faster than any of our previous releases...

Read More The CellProfiler 2 User’s Guide to CellProfiler 3.0, Part I: Using the new Test Mode

Help! Why do my output images seem all black?

March 15, 2017

Beth Cimini

Double clicking on the output images produced by CellProfiler sometimes opens up a screen in your operating system’s default image viewer that looks all black. This can make it seem...

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Read More Help! Why do my output images seem all black?

Making it easier to run image analysis in the cloud: announcing Distributed-CellProfiler

December 28, 2016

Beth Cimini

There’s nothing more exciting than getting back a big batch of data from your automated microscope – finally, you have the results of your screen, your timelapse, or whatever you’ve...

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Read More Making it easier to run image analysis in the cloud: announcing Distributed-CellProfiler

Help! What are these three different modules to identify objects?

December 21, 2016

Beth Cimini

It can be confusing when you’re trying to set up your first pipeline to figure out which modules to use to generate your objects!  A helpful way to understand the difference between...

Read More Help! What are these three different modules to identify objects?

Getting started using CellProfiler from the command line

April 30, 2021

Beth Cimini

Cross posted from our GitHub wiki — check there for any future updates!

Running CellProfiler from the command line has a major advantage — you don't need to spend computational power or...

Read More Getting started using CellProfiler from the command line

CellProfiler 4.1 Release

April 27, 2021

Beth Cimini

Hi all,
 
We hope you’re enjoying our new CellProfiler 4.1 release!  If you haven’t had a chance to see it yet, please do grab a copy from https://cellprofiler.org/releases. 

There are a...

Read More CellProfiler 4.1 Release

Making it easy to share the CRediT on your collaborative research projects

May 04, 2023

Beth Cimini

In the Imaging Platform, we tend to work on a lot of big, complicated projects, with a lot of moving pieces and sometimes collaborators in many countries! This is fantastic for science...

Read More Making it easy to share the CRediT on your collaborative research projects

Announcing CellProfiler 4.2.6 and RunCellpose updates

August 16, 2023

Hi all,

Due to issues with pip installation with CellProfiler on some platforms, we have released a version 4.2.6 with slightly updated dependency pins. If you are using the CellProfiler 4.2.5...

Read More Announcing CellProfiler 4.2.6 and RunCellpose updates
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