Blog

David R. Stirling

We have now released CellProfiler version 4.0! Download it here.

The primary goal of this release has been to migrate CellProfiler from Python 2 to Python 3. This has...

David R. Stirling

We’ve all done this before – CellProfiler Analyst needs a database file, but your CellProfiler pipeline that took days to run was set up to export spreadsheets. To make matters...

Guest Author

This post was written by a guest author, Jillian Rowe, who can be reached at jillian@dabbleofdevops.com. 

Running CellProfiler in batch mode is the ideal way to automate large...

Beth Cimini

One of the most common questions I’m asked when helping a collaborator with an image analysis project is:

“How do I know when my analysis workflow is doing well enough at finding the...

Kyle Karhohs

Imaging tissue slices provides a wealth of data about the spatial composition and number of the various cell types that make up a tissue. Interactions among cells within a tissue are...

Beth Cimini

Hello all! It’s been a crazy last few months for the CellProfiler team, as we’ve been hiring some new members to the team and working hard on the transition to Python 3, which will...

Minh Doan

Have you ever stumbled across some amazing data visualization tools that run entirely on a web browser (such as this and many others), and wished you could plug in your own data and...

Beth Cimini

Happy holidays to everyone- we here at the CellProfiler team got you a little end-of-year treat in the form of CellProfiler 3.1.8.  This is primarily a bugfix release, getting rid of...

Anne Carpenter

Clearly communicating the impact of your research is one of the most important skills you need to develop as a scientist, and yet typically it is only taught by doing (and if you...

Jeanelle Ackerman

You’ve earned degrees, authored papers, mentored supervisees, and traveled far and wide to speak about your work… And ideally it’s nicely showcased in your resume or curriculum...