Blog

Pearl V. Ryder

The Robust Background algorithm is a powerful algorithm for automatically setting thresholds to segment objects of interest when your image contains mostly background. However...

Alice Lucas

We’re delighted to release Piximi Annotator, a new image annotation tool that we built to be easily accessible, easy to use, yet with a full complement of annotation tools to allow for...

David R. Stirling

Hi all,

We’ve now released CellProfiler 4.2! You can download it from https://cellprofiler.org/releases. 

We have a few new features and improvements in this release. There have...

Beth Cimini

Cross posted from our GitHub wiki — check there for any future updates!

Running CellProfiler from the command line has a major advantage — you don't need to spend computational power or...

David R. Stirling

We have now released CellProfiler Analyst version 3.0! Download it here.

As with CellProfiler 4, the primary goal of this release has been to migrate from Python 2 to...

Beth Cimini

Hi all,
 
We hope you’re enjoying our new CellProfiler 4.1 release!  If you haven’t had a chance to see it yet, please do grab a copy from https://cellprofiler.org/releases. 

There are a...

David R. Stirling

We have now released CellProfiler version 4.0! Download it here.

The primary goal of this release has been to migrate CellProfiler from Python 2 to Python 3. This has...

David R. Stirling

We’ve all done this before – CellProfiler Analyst needs a database file, but your CellProfiler pipeline that took days to run was set up to export spreadsheets. To make matters...

Guest Author

This post was written by a guest author, Jillian Rowe, who can be reached at jillian@dabbleofdevops.com. 

Running CellProfiler in batch mode is the ideal way to automate large...

Beth Cimini

One of the most common questions I’m asked when helping a collaborator with an image analysis project is:

“How do I know when my analysis workflow is doing well enough at...