Search results

4 results found

Customizing a Model for Fiber Segmentation, Part 4: Analyzing the Results

Melissa Gillis In the final section of this blogpost series, I will discuss some of the benefits and drawbacks of this model and discuss some of the data I acquired from the images. This model was able to successfully segment the images that were not able to be accurately segmented by Pearl’s...

Customizing a Model for Fiber Segmentation, Part 2: Creating an ilastik Model

Melissa Gillis In the first part of this blogpost I described some of the tools I tried to accurately segment collagen IV fibers including, CellProfiler, Cellpose , and Piximi . Unfortunately none of these methods were successful in accurately segmenting the fibers so I decided to develop a machine...