Beth Cimini

Hello all! It’s been a crazy last few months for the CellProfiler team, as we’ve been hiring some new members to the team and working hard on the transition to Python 3, which will...

Beth Cimini

Happy holidays to everyone- we here at the CellProfiler team got you a little end-of-year treat in the form of CellProfiler 3.1.8.  This is primarily a bugfix release, getting rid of...

Beth Cimini

I’m excited to announce the release of CellProfiler 3.1.

Our focus for CellProfiler 3.1 was polishing features and squashing bugs introduced in CellProfiler 3.0. We also started...

Anne Carpenter

We are thrilled to announce that CellProfiler 3.0 is now released!  Download it here.

Eighteen months in the making, this is the first version of CellProfiler that can identify...

Beth Cimini

There’s nothing more exciting than getting back a big batch of data from your automated microscope – finally, you have the results of your screen, your timelapse, or whatever you’ve...

CellProfiler Team

The CellProfiler team is excited to announce the launch of our new blog!

Articles will have a variety of topics, ranging from general knowledge, to specific module use and...

David R. Stirling

We have now released CellProfiler version 4.0! Download it here.

The primary goal of this release has been to migrate CellProfiler from Python 2 to Python 3. This has...

David R. Stirling

We have now released CellProfiler Analyst version 3.0! Download it here.

As with CellProfiler 4, the primary goal of this release has been to migrate from Python 2 to Python 3 and...

Beth Cimini

Hi all,
 
We hope you’re enjoying our new CellProfiler 4.1 release!  If you haven’t had a chance to see it yet, please do grab a copy from https://cellprofiler.org/releases. 

There are a...

David R. Stirling

Hi all,

We’ve now released CellProfiler 4.2! You can download it from https://cellprofiler.org/releases. 

We have a few new features and improvements in this release. There have...

Alice Lucas

We’re delighted to release Piximi Annotator, a new image annotation tool that we built to be easily accessible, easy to use, yet with a full complement of annotation tools to allow for...

David R. Stirling

Hi everyone,

Today we’re releasing the RunCellpose plugin for CellProfiler 4! This plugin is designed to allow you to use the popular Cellpose segmentation algorithm to generate...

Microscopy in the cloud: CellProfiler and Cell Painting on Terra

Authors: Carmen Diaz Verdugo, Stephen Fleming, Nicole Deflaux and Amy Unruh

Carmen Diaz Verdugo is a Computational Scientist in the...

Hi all,

Due to issues with pip installation with CellProfiler on some platforms, we have released a version 4.2.6 with slightly updated dependency pins. If you are using the CellProfiler 4.2.5...