Blog

Search results

14 results found

Announcing CellProfiler 4.2.6 and RunCellpose updates

Hi all, Due to issues with pip installation with CellProfiler on some platforms, we have released a version 4.2.6 with slightly updated dependency pins. If you are using the CellProfiler 4.2.5 application downloaded from our website, there is no need for you to update - 4.2.6 contains no changes to...

Microscopy in the cloud: CellProfiler and Cell Painting on Terra

Microscopy in the cloud: CellProfiler and Cell Painting on Terra Authors: Carmen Diaz Verdugo, Stephen Fleming, Nicole Deflaux and Amy Unruh Carmen Diaz Verdugo is a Computational Scientist in the Precision Cardiology Lab, and a member of Patrick Ellinor’s group. Stephen Fleming is a Senior Machine...

New CellProfiler 4 Plugin: RunCellpose

David R. Stirling Hi everyone, Today we’re releasing the RunCellpose plugin for CellProfiler 4! This plugin is designed to allow you to use the popular Cellpose segmentation algorithm to generate object sets within a CellProfiler pipeline. Cellpose uses a neural network followed by post-processing...

CellProfiler 4.2 Release

David R. Stirling Hi all, We’ve now released CellProfiler 4.2! You can download it from https://cellprofiler.org/releases . We have a few new features and improvements in this release. There have been numerous smaller bug fixes, but the key changes are as follows: We’ve fixed an issue which was...

CellProfiler 4.1 Release

Beth Cimini Hi all, We hope you’re enjoying our new CellProfiler 4.1 release! If you haven’t had a chance to see it yet, please do grab a copy from https://cellprofiler.org/releases . There are a few new features or changes of note we’re particularly excited to share with you all: For the first time...

CellProfiler 4.0 Release: Improvements in speed, utility, and usability

David R. Stirling We have now released CellProfiler version 4.0! Download it here . The primary goal of this release has been to migrate CellProfiler from Python 2 to Python 3. This has involved extensive restructuring of the code base, leading to a lot of “under-the-hood” improvements. Important...

Announcing CellProfiler 3.1.9

Beth Cimini Hello all! It’s been a crazy last few months for the CellProfiler team, as we’ve been hiring some new members to the team and working hard on the transition to Python 3, which will bump us into CellProfiler version 4. Keep your eyes peeled for exciting content in the future! We did want...

Announcing CellProfiler 3.1.8

Beth Cimini Happy holidays to everyone- we here at the CellProfiler team got you a little end-of-year treat in the form of CellProfiler 3.1.8. This is primarily a bugfix release, getting rid of some bugs in MeasureObjectIntensity, MeasureColocalization, ExportToSpreadsheet...