Blog

Authors: Esteban Miglietta and Nodar Gogoberidze

In a previous post, we have already discussed what Docker containers are and how to build them. Here, we're going to talk about an alternative to...

What is the COA form? 

NSF requires you to report all “Co-authors on any book, article, report, abstract or paper with...

Segmentation is an integral step of any bioimage analysis workflow, which involves delineating areas or objects of interest within an image¹. All the measurements performed on the image, e.g. size...

Docker is discussed in the bioimage analysis world a lot these days. But what are dockers? How does Docker make life easier? In this blog post, I will try to explain the basics of docker and why it...

Hi all,

Due to issues with pip installation with CellProfiler on some platforms, we have released a version 4.2.6 with slightly updated dependency pins. If you are using the CellProfiler 4.2.5...

Microscopy in the cloud: CellProfiler and Cell Painting on Terra

Authors: Carmen Diaz Verdugo, Stephen Fleming, Nicole Deflaux and Amy Unruh

Carmen Diaz Verdugo is a Computational Scientist in the...

When you are new to the coding world, a lot of new information can be overwhelming. Staying organized might help ease the learning process. This blog post is about simple ways to organize your Jupyter...

Beth Cimini

In the Imaging Platform, we tend to work on a lot of big, complicated projects, with a lot of moving pieces and sometimes collaborators in many countries! This is fantastic for science...

Fernanda Garcia-Fossa & Anne Carpenter

In a typical quantitative microscopy experiment, biologists choose fluorescent biomarkers and measure particular features (that is “metrics”) that they...

Rebecca Senft

With slide scanners and other automated, high-throughput microscopes becoming more and more common, it’s important to understand how to work with the large image files they produce...